The peer rebrewers meet every other Friday at 5PM at Beggar’s Banquet (location subject to change) to provide an enjoyable, low-pressure setting to discuss significant or recent papers in genomics, systems biology, evolutionary biology, and related fields. No one presents or defends the paper and everyone is assumed to have at least skimmed it to jump right into a casual discussion. Everyone is welcome, attendence every meeting is not mandatory, and anyone can submit a paper suggesstion
This reading group structure is blatantly copied from Jeff Ross-Ibarra’s R.E.H.A.B. Anyone who wants to be added to the email list or has paper suggestions can email me at birdkevi(at)msu.edu
Van Deynze et al. Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota
Ford et al. Frequent lack of repressive capacity of promoter DNA methylation identified through genome-wide epigenomic manipulation
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Korthauer and Irizarry. Genome-wide repressive capacity of promoter DNA methylation is revealed through epigenomic manipulation
**No meetings, so many conferences!!!**
McKain et al. Ancestry of the two subgenomes of maize
Winter et al. Repeat elements organize 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae
Koffer et al. Molecular dissection of a natural transposable element invasion
**Cancelled: Out of town**
Sotelo-Silveira et al. Entering the Next Dimension: Plant Genomes in 3D
Kerwin et al. Epistasis × environment interactions among Arabidopsis thaliana glucosinolate genes impact complex traits and fitness in the field
Kremling et al. Dysregulation of expression correlates with rare-allele burden and fitness loss in maize
Lippert et al. Identification of individuals by trait prediction using whole-genome sequencing data
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Erlich. Major flaws in “Identification of individuals by trait prediction using whole-genome”
Zhao et al. Proliferation of regulatory DNA elements derived from transposable elements in the maize genome
Boyle et al. An expanded view of complex traits: from polygenic to omnigenic
Dunn et al. Pairwise comparisons across species are problematic when analyzing functional genomic data
Lin et al. Substantial contribution of genetic variation in the expression of transcription factors to phenotypic variation revealed by eRD-GWAS
Castel et al. Modified penetrance of coding variants by cis-regulatory variation shapes human traits
Salojärvi et al. Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch
Mei et al. Adaptation in plant genomes: bigger is different
Greenham et al. Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa